In Eclipse, from the Help menu -> Eclipse Marketplace, lookup for Terminal. Install the plugin TM Terminal that you'll come across as below:
Once installed, simply mention the shell interpreter location in the Preferences for e.g. /bin/bash and also choose the initial working directory as either your User Home or Eclipse Workspace.
Now go to Window -> Show View and choose Terminal to show it within Eclipse and click the following blue button to open a new session.
This way you can run shell scripts from within Eclipse itself. Cheers!
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